ccf_v3_atlas_generation module

ccf_v3_atlas_generation.generate_regions_file(src, dst)

ccf_v3_atlas_generation.generate_simplified_atlas(atlas_resolution, simplified_regions_list_path, ext)

ccf_v3_atlas_generation.get_all_id_acr(hierarchy, structure='empty')

Recursively find all the acronyms in hierarchy, and associate them to a major anatomical group. :param hierarchy: JSON object. The hierarchy of the Allen CCF V3 in the JSON format. :param structure: string. Hyperparameter tracking the major anatomical group the acronym is associated with.

Refer to the general doc for a list of the major groups.

ccf_v3_atlas_generation.get_regions_in_atlas(atlas, hierarchy, atlas_resolution, ext='')

ccf_v3_atlas_generation.load_atlas(atlas_resolution, save_npy=True, extract_contours=False)